JASPAR RESTful API

This API provides an easy-to-use REST web interface to query/retrieve matrix profile data from the latest version of the JASPAR database. The API comes with a human browsable interface and also a programmatic interface which return the results in eight different formats, including json, jsonp, jaspar, meme, transfac, pfm, yaml and bed.

GET /api/v1/matrix/MA1080.1/?format=api

HTTP 200 OK
Allow: GET, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "tfe_ids": [],
    "species": [
        {
            "tax_id": 3702,
            "name": "Arabidopsis thaliana"
        }
    ],
    "pfm": {
        "C": [
            1.0,
            1.0,
            1.0,
            998.0,
            1.0,
            1.0,
            831.0,
            143.0
        ],
        "A": [
            698.0,
            1.0,
            1.0,
            1.0,
            998.0,
            998.0,
            167.0,
            143.0
        ],
        "T": [
            1.0,
            1.0,
            998.0,
            1.0,
            1.0,
            1.0,
            1.0,
            1.0
        ],
        "G": [
            300.0,
            998.0,
            1.0,
            1.0,
            1.0,
            1.0,
            1.0,
            712.0
        ]
    },
    "name": "WRKY23",
    "comment": "Data is from PMID:25215497",
    "tfe_id": [],
    "tffm": null,
    "version": 1,
    "versions_url": "https://jaspar2018.genereg.net/api/v1/matrix/MA1080/versions",
    "uniprot_ids": [
        "O22900"
    ],
    "pazar_tf_ids": [],
    "collection": "CORE",
    "family": [],
    "medline": [
        "11449049"
    ],
    "pubmed_ids": [
        "11449049"
    ],
    "sequence_logo": "https://jaspar2018.genereg.net/static/logos/svg/MA1080.1.svg",
    "sites_url": null,
    "base_id": "MA1080",
    "type": "PBM",
    "matrix_id": "MA1080.1",
    "source": "25215497",
    "class": [
        "WRKY"
    ],
    "tax_group": "plants",
    "pazar_tf_id": []
}

Matrix Details