JASPAR CORE

  1. Home
  2. Collection core

Total 1564 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0095.2 YY1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc finger factors
MA0096.1 bZIP910 Antirrhinum majus Basic leucine zipper factors (bZIP)
MA0097.1 bZIP911 Antirrhinum majus Basic leucine zipper factors (bZIP)
MA0098.1 ETS1 Homo sapiens Tryptophan cluster factors Ets-related factors
MA0098.2 Ets1 Mus musculus Tryptophan cluster factors Ets-related factors
MA0098.3 ETS1 Homo sapiens Tryptophan cluster factors Ets-related factors
MA0099.1 JUN::FOS Mus musculus Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Fos-related factors::Jun-related factors
MA0099.2 FOS::JUN Homo sapiens Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Fos-related factors::Jun-related factors
MA0099.3 FOS::JUN Homo sapiens Basic leucine zipper factors (bZIP)::Basic leucine zipper factors (bZIP) Fos-related factors::Jun-related factors
MA0100.1 Myb Mus musculus Tryptophan cluster factors Myb/SANT domain factors
MA0100.2 Myb Mus musculus Tryptophan cluster factors Myb/SANT domain factors
MA0100.3 MYB Homo sapiens Tryptophan cluster factors Myb/SANT domain factors
MA0101.1 REL Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0102.1 Cebpa Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP) C/EBP-related
MA0102.2 CEBPA Mus musculus Rattus norvegicus Basic leucine zipper factors (bZIP) C/EBP-related
MA0102.3 CEBPA Homo sapiens Basic leucine zipper factors (bZIP) C/EBP-related
MA0103.1 ZEB1 Gallus gallus Homeo domain factors HD-ZF factors
MA0103.2 ZEB1 Homo sapiens Homeo domain factors HD-ZF factors
MA0103.3 ZEB1 Homo sapiens Homeo domain factors HD-ZF factors
MA0104.1 Mycn Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP factors
MA0104.2 Mycn Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP factors
MA0104.3 Mycn Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP factors
MA0104.4 MYCN Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP factors
MA0105.1 NFKB1 Homo sapiens Oryctolagus cuniculus Mus musculus Rattus norvegicus Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.2 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.3 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0105.4 NFKB1 Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0106.1 TP53 Homo sapiens p53 domain factors p53-related factors
MA0106.2 TP53 Homo sapiens p53 domain factors p53-related factors
MA0106.3 TP53 Homo sapiens p53 domain factors p53-related factors
MA0107.1 RELA Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0108.1 TBP NA TATA-binding proteins TBP-related factors
MA0108.2 TBP NA TATA-binding proteins TBP-related factors
MA0109.1 HLTF Oryctolagus cuniculus Tryptophan cluster factors Myb/SANT domain factors
MA0110.1 ATHB-5 Arabidopsis thaliana Homeo domain factors Homeo
MA0110.2 ATHB-5 Arabidopsis thaliana Homeo domain factors
MA0111.1 Spz1 Mus musculus Basic helix-loop-helix factors (bHLH)
MA0112.1 ESR1 Xenopus laevis Xenopus (Silurana) tropicalis Gallus gallus Homo sapiens Bos taurus Oryctolagus cuniculus Mus musculus Rattus norvegicus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0112.2 ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0112.3 ESR1 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0113.1 NR3C1 Oncorhynchus mykiss Gallus gallus Homo sapiens Mus musculus Rattus norvegicus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0113.2 NR3C1 Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0113.3 NR3C1 Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0114.1 HNF4A NA Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0114.2 HNF4A Homo sapiens Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0114.3 Hnf4a Mus musculus Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA0115.1 NR1H2::RXRA Homo sapiens Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
MA0116.1 Znf423 Rattus norvegicus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0117.1 Mafb Rattus norvegicus Basic leucine zipper factors (bZIP) Maf-related factors
MA0117.2 Mafb Mus musculus Basic leucine zipper factors (bZIP) Maf-related factors
Showing 50 profiles of page 4 from 32 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.