Detailed information of matrix profile MA0110.2

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Profile summary
Name: ATHB-5
Matrix ID: MA0110.2
Class: Homeo domain factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: SELEX
Validation: 11247607
Uniprot ID: P46667  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 0 4 2 2 0 32 39 0 2 39 0 0 0 ]
C [ 9 9 12 17 32 6 0 0 8 0 0 0 0 ]
G [ 12 17 8 10 4 0 0 0 7 0 0 0 7 ]
T [ 9 4 14 7 3 1 0 39 22 0 39 39 1 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0110.1 MA0110 1 ATHB-5 Arabidopsis thaliana
Homeo Homeo domain factors
MA0110.2 MA0110 2 ATHB-5 Arabidopsis thaliana
Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0294.1

ChIP-seq Centrality
log(P-value): -32701.0

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0294.1

ChIP-seq Centrality
log(P-value): -32557.3

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: