JASPAR Collection PBM

Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0161.1 Rxra_2 Mus musculus Zinc-coordinating Hormone-nuclear Receptor
PB0162.1 Sfpi1_2 Mus musculus Winged Helix-Turn-Helix Ets
PB0163.1 Six6_2 Mus musculus Helix-Turn-Helix Homeo
PB0164.1 Smad3_2 Mus musculus Zinc-coordinating MH1
PB0165.1 Sox11_2 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0166.1 Sox12_2 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0167.1 Sox13_2 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0168.1 Sox14_2 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0169.1 Sox15_2 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0170.1 Sox17_2 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
Showing 10 profiles of page 17 from 21 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.