JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0031.1 LM31 CTTTTCATCTTCAAAGYRCTTT Homo sapiens
CN0032.1 LM32 CTGACATTTYCAAA Homo sapiens
CN0033.1 LM33 GWAATTGGAAACAKCTG Homo sapiens
CN0034.1 LM34 WSATTTGCATTGCAAATGM Homo sapiens
CN0035.1 LM35 WRACTTCAAAGGGAGCTB Homo sapiens
CN0036.1 LM36 KGAAAWKNNAWTTYCHW Homo sapiens
CN0037.1 LM37 YATGCAAATGAGCCM Homo sapiens
CN0038.1 LM38 GCAAATTAGCAGCT Homo sapiens
CN0039.1 LM39 KNKGTYTCCTAGGAAACM Homo sapiens
CN0040.1 LM40 TCCCATTGACTTCAAWGGGAGYT Homo sapiens
Showing 10 profiles of page 4 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.