JASPAR Collection CNE

Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0011.1 LM11 ATGGAAATGCTGACAGAMCCTTAA Homo sapiens
CN0012.1 LM12 RTGGCCTGAAAGAGTTAATGCW Homo sapiens
CN0013.1 LM13 WTGCTAATTAGCA Homo sapiens
CN0014.1 LM14 WNATCCAGATGTTTGGCAYYW Homo sapiens
CN0015.1 LM15 MATTTGCATGCAAATGA Homo sapiens
CN0016.1 LM16 CTTTGARATCCTYAGATGAAAGR Homo sapiens
CN0017.1 LM17 WNWRCATCTGRTTTGCATTW Homo sapiens
CN0018.1 LM18 ATTTGCATNTSATTTGCAT Homo sapiens
CN0019.1 LM19 TGCTAATTAGCAGCH Homo sapiens
CN0020.1 LM20 TGACAGCTGTCA Homo sapiens
Showing 10 profiles of page 2 from 24 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.