JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0021.1 LM21 ATTTGCATNTCATTTGCATW Homo sapiens
CN0022.1 LM22 CAGCTGTTWAACAGCTG Homo sapiens
CN0023.1 LM23 TKACCACCAGGTGGYGCTRW Homo sapiens
CN0024.1 LM24 DGARAACAGATGGCW Homo sapiens
CN0025.1 LM25 AAARGMAATTKCYTTT Homo sapiens
CN0026.1 LM26 WAAACACAGCTGT Homo sapiens
CN0027.1 LM27 ATTTGCATSTCATTWGCA Homo sapiens
CN0028.1 LM28 AGAACATCTGTTTCY Homo sapiens
CN0029.1 LM29 WGCTAATTGCAAATG Homo sapiens
CN0030.1 LM30 CTTTGAAATGTCAAW Homo sapiens
Showing 10 profiles of page 3 from 24 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.