JASPAR: An open-access database of transcription factor binding profiles

ID	Name	JASPAR	TRANSFAC
PF0171.1	CTCNANGTGNY	-	-
PF0172.1	TTGCWCAAY	-	C/EBPBETA
PF0173.1	YWATTWNNRGCT	-	-
PF0174.1	WTGAAAT	-	-

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Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster selected models using STAMP tool.

Column comparison metric

Alignment method

Tree-building method

Multiple alignment method

You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.

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Create models with permuted columns from selected models.

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Download the PFMs of the model(s) selected in four different formats.

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JASPAR Collection PHYLOFACTS