JASPAR Collection CNE

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Total 233 profiles

Display profiles
ID Name Consensus Species Sequence logo
CN0131.1 LM131 TCCAAYTTGGATAATTGCAT Homo sapiens
CN0132.1 LM132 TRGTTCTCATTAAG Homo sapiens
CN0133.1 LM133 ACAGCCATAAATCAC Homo sapiens
CN0134.1 LM134 CTTAATTAGCTGWA Homo sapiens
CN0135.1 LM135 ACCCTRGTGGCCTGAAAGAG Homo sapiens
CN0136.1 LM136 NKYTGCCAAGAGCAACA Homo sapiens
CN0137.1 LM137 WNRRAGBAATTTGGCAGCW Homo sapiens
CN0138.1 LM138 ACAAAAGCCAGGAAAT Homo sapiens
CN0139.1 LM139 ACTGACCTACTTTCC Homo sapiens
CN0140.1 LM140 GTGACCTTTTGTTC Homo sapiens
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.