Detailed information of matrix profile PH0160.1

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Profile summary
Name: Shox2
Matrix ID: PH0160.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: P70390  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 23 31 12 42 41 2 2 97 98 1 0 92 54 20 17 32 14 ]
C [ 33 27 36 20 25 42 6 1 0 1 2 0 2 29 16 33 23 ]
G [ 31 17 21 26 15 2 0 2 1 0 1 6 42 27 35 16 42 ]
T [ 12 25 31 12 20 54 92 0 1 98 97 2 2 25 32 19 20 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0160.1 PH0160 1 Shox2 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: