Detailed information of matrix profile PH0160.1

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Profile summary
Name: Shox2
Matrix ID: PH0160.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: P70390  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 20 19 32 25 2 2 97 98 1 0 92 54 20 12 31 25 12 ]
C [ 42 16 35 27 42 6 1 0 1 2 0 2 15 26 21 17 31 ]
G [ 23 33 16 29 2 0 2 1 0 1 6 42 25 20 36 27 33 ]
T [ 14 32 17 20 54 92 0 1 98 97 2 2 41 42 12 31 23 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0160.1 PH0160 1 Shox2 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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Included Models:

GC Content: