Detailed information of matrix profile PH0130.1

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Profile summary
Name: Otx2
Matrix ID: PH0130.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: P80206  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 21 43 26 38 62 11 7 98 99 1 1 0 1 5 34 26 29 ]
C [ 14 21 32 8 12 12 0 0 0 0 97 91 67 31 22 38 27 ]
G [ 45 17 13 34 15 2 0 0 0 5 0 1 11 15 15 7 21 ]
T [ 21 19 30 20 11 75 92 1 1 95 1 8 20 48 29 29 23 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0130.1 PH0130 1 Otx2 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: