Detailed information of matrix profile PH0130.1

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Profile summary
Name: Otx2
Matrix ID: PH0130.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: P80206  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 23 29 29 48 20 8 1 95 1 1 92 75 11 20 30 19 21 ]
C [ 21 7 15 15 11 1 0 5 0 0 0 2 15 34 13 17 45 ]
G [ 27 38 22 31 67 91 97 0 0 0 0 12 12 8 32 21 14 ]
T [ 29 26 34 5 1 0 1 1 99 98 7 11 62 38 26 43 21 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0130.1 PH0130 1 Otx2 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: