Detailed information of matrix profile PH0117.1

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Profile summary
Name: Nkx3-1
Matrix ID: PH0117.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: P97436  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 23 36 23 29 76 85 1 0 85 1 2 2 69 63 57 30 20 ]
C [ 13 12 35 8 0 1 4 14 1 94 12 22 10 5 14 8 25 ]
G [ 21 16 16 23 22 12 94 1 14 4 1 0 5 22 14 17 30 ]
T [ 43 36 26 41 2 2 1 85 0 1 85 76 16 9 15 44 24 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0117.1 PH0117 1 Nkx3-1 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: