Detailed information of matrix profile PH0100.1

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Profile summary
Name: Lmx1a
Matrix ID: PH0100.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: Q9JKU8  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 16 17 43 42 6 3 94 96 3 5 93 77 50 52 48 22 17 ]
C [ 51 21 18 13 13 4 1 0 0 1 0 4 6 12 18 37 34 ]
G [ 25 48 16 13 4 0 1 0 0 1 4 13 9 5 7 15 17 ]
T [ 8 14 23 32 77 93 5 3 96 94 3 6 35 30 27 26 32 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0100.1 PH0100 1 Lmx1a Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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Consensus:

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GC Content: