Detailed information of matrix profile PH0040.1

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Profile summary
Name: Hmbox1
Matrix ID: PH0040.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: Q8BJA3  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 25 37 44 46 47 1 1 70 1 0 11 94 64 13 33 25 7 ]
C [ 23 20 10 15 9 85 1 0 0 0 1 1 6 44 13 11 43 ]
G [ 30 10 34 22 14 2 3 29 99 1 0 2 10 14 26 20 31 ]
T [ 21 34 13 18 30 12 96 0 0 98 88 3 20 29 28 43 19 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0040.1 PH0040 1 Hmbox1 Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: