Detailed information of matrix profile MA1226.1

  1. Home
  2. Matrix > MA1226.1

Profile summary
Name: AT5G18450
Matrix ID: MA1226.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 15319480
Uniprot ID: P61827  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 95 88 137 84 98 304 185 34 21 0 0 25 0 54 237 ]
C [ 41 54 179 49 42 133 0 0 509 0 0 156 0 38 156 ]
G [ 357 371 58 312 386 12 395 531 0 587 587 0 584 491 50 ]
T [ 94 74 213 142 61 138 7 22 57 0 0 406 3 4 144 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1226.1 MA1226 1 AT5G18450 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0275.1

ChIP-seq Centrality
log(P-value): -1361.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0275.1

ChIP-seq Centrality
log(P-value): -1269.14

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: