Detailed information of matrix profile MA1226.1

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Profile summary
Name: AT5G18450
Matrix ID: MA1226.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 15319480
Uniprot ID: P61827  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 144 4 3 406 0 0 57 22 7 138 61 142 213 74 94 ]
C [ 50 491 584 0 587 587 0 531 395 12 386 312 58 371 357 ]
G [ 156 38 0 156 0 0 509 0 0 133 42 49 179 54 41 ]
T [ 237 54 0 25 0 0 21 34 185 304 98 84 137 88 95 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1226.1 MA1226 1 AT5G18450 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0275.1

ChIP-seq Centrality
log(P-value): -1361.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0275.1

ChIP-seq Centrality
log(P-value): -1269.14

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: