Detailed information of matrix profile MA1216.1

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Profile summary
Name: RAP21
Matrix ID: MA1216.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9756931
Uniprot ID: Q8LC30  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 173 54 0 61 0 0 0 0 0 115 171 110 159 ]
C [ 33 85 0 1 590 0 0 158 0 76 184 63 74 ]
G [ 223 60 589 148 0 590 590 0 567 363 49 303 244 ]
T [ 161 391 1 380 0 0 0 432 23 36 186 114 113 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1216.1 MA1216 1 RAP21 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0378.1

ChIP-seq Centrality
log(P-value): -2597.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0378.1

ChIP-seq Centrality
log(P-value): -2590.11

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: