Detailed information of matrix profile MA1156.1

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Profile summary
Name: JKD
Matrix ID: MA1156.1
Class: C2H2
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q700D2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 163 161 162 176 145 83 6 0 0 0 0 11 31 9 57 87 134 71 47 143 ]
C [ 108 99 101 63 70 30 24 5 10 0 0 564 62 20 99 0 27 228 135 55 ]
G [ 67 72 79 75 74 31 13 4 0 596 13 0 331 42 34 0 8 193 39 209 ]
T [ 258 264 254 282 307 452 553 587 586 0 583 21 172 525 406 509 427 104 375 189 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1156.1 MA1156 1 JKD Arabidopsis thaliana
C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0353.1

ChIP-seq Centrality
log(P-value): -4470.69

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0353.1

ChIP-seq Centrality
log(P-value): -4475.39

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: