Detailed information of matrix profile MA1156.1

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Profile summary
Name: JKD
Matrix ID: MA1156.1
Class: C2H2
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q700D2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 189 375 104 427 509 406 525 172 21 583 0 586 587 553 452 307 282 254 264 258 ]
C [ 209 39 193 8 0 34 42 331 0 13 596 0 4 13 31 74 75 79 72 67 ]
G [ 55 135 228 27 0 99 20 62 564 0 0 10 5 24 30 70 63 101 99 108 ]
T [ 143 47 71 134 87 57 9 31 11 0 0 0 0 6 83 145 176 162 161 163 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1156.1 MA1156 1 JKD Arabidopsis thaliana
C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0353.1

ChIP-seq Centrality
log(P-value): -4470.69

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0353.1

ChIP-seq Centrality
log(P-value): -4475.39

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: