JASPAR Collection PBM

  1. Home
  2. Collection PBM

Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0081.1 Tcf1_1 Mus musculus Helix-Turn-Helix Homeo
PB0082.1 Tcf3_1 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0083.1 Tcf7_1 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0084.1 Tcf7l2_1 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0085.1 Tcfap2a_1 Mus musculus Zipper-Type Helix-Loop-Helix
PB0086.1 Tcfap2b_1 Mus musculus Zipper-Type Helix-Loop-Helix
PB0087.1 Tcfap2c_1 Mus musculus Zipper-Type Helix-Loop-Helix
PB0088.1 Tcfap2e_1 Mus musculus Zipper-Type Helix-Loop-Helix
PB0089.1 Tcfe2a_1 Mus musculus Zipper-Type Helix-Loop-Helix
PB0090.1 Zbtb12_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
Showing 10 profiles of page 9 from 21 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.