JASPAR Collection PBM

  1. Home
  2. Collection PBM

Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0021.1 Gata3_1 Mus musculus Zinc-coordinating GATA
PB0022.1 Gata5_1 Mus musculus Zinc-coordinating GATA
PB0023.1 Gata6_1 Mus musculus Zinc-coordinating GATA
PB0024.1 Gcm1_1 Mus musculus Zinc-coordinating Glial Cells Missing (GCM)
PB0025.1 Glis2_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0026.1 Gm397_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0027.1 Gmeb1_1 Mus musculus Other Alpha-Helix Sand
PB0028.1 Hbp1_1 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0029.1 Hic1_1 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0030.1 Hnf4a_1 Mus musculus Zinc-coordinating Hormone-nuclear Receptor
Showing 10 profiles of page 3 from 21 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.