JASPAR Collection PBM

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Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0191.1 Tcfap2c_2 Mus musculus Zipper-Type Helix-Loop-Helix
PB0192.1 Tcfap2e_2 Mus musculus Zipper-Type Helix-Loop-Helix
PB0193.1 Tcfe2a_2 Mus musculus Zipper-Type Helix-Loop-Helix
PB0194.1 Zbtb12_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0195.1 Zbtb3_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0196.1 Zbtb7b_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0197.1 Zfp105_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0198.1 Zfp128_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0199.1 Zfp161_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0200.1 Zfp187_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
Showing 10 profiles of page 20 from 21 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.