JASPAR Collection PBM

  1. Home
  2. Collection PBM

Total 208 profiles

Display profiles
ID Name Species Class Family Sequence logo
PB0141.1 Isgf3g_2 Mus musculus Winged Helix-Turn-Helix IRF
PB0142.1 Jundm2_2 Mus musculus Zipper-Type Leucine Zipper
PB0143.1 Klf7_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0144.1 Lef1_2 Mus musculus Other Alpha-Helix High Mobility Group box (HMG)
PB0145.1 Mafb_2 Mus musculus Zipper-Type Leucine Zipper
PB0146.1 Mafk_2 Mus musculus Zipper-Type Leucine Zipper
PB0147.1 Max_2 Mus musculus Zipper-Type Helix-Loop-Helix
PB0148.1 Mtf1_2 Mus musculus Zinc-coordinating BetaBetaAlpha-zinc finger
PB0149.1 Myb_2 Mus musculus Helix-Turn-Helix Myb
PB0150.1 Mybl1_2 Mus musculus Helix-Turn-Helix Myb
Showing 10 profiles of page 15 from 21 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.