Detailed information of matrix profile PH0128.1

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Profile summary
Name: Otp
Matrix ID: PH0128.1
Class: Helix-Turn-Helix
Family: Homeo
Collection: PBM_HOMEO
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 18585359
Uniprot ID: O09113  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 15 25 38 43 1 1 98 98 0 0 96 88 4 23 38 16 18 ]
C [ 60 35 28 9 12 4 1 0 1 1 0 0 39 18 12 34 21 ]
G [ 12 18 10 42 0 0 1 1 0 1 4 12 10 18 36 20 38 ]
T [ 12 22 23 6 88 96 0 0 98 98 1 1 47 41 15 31 23 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PH0128.1 PH0128 1 Otp Mus musculus
Homeo Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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Consensus:

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GC Content: