Detailed information of matrix profile PB0171.1

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Profile summary
Name: Sox18_2
Matrix ID: PB0171.1
Class: Other Alpha-Helix
Family: High Mobility Group box (HMG)
Collection: PBM
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 19443739
Uniprot ID: P43680  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 18 25 26 38 4 36 64 85 6 10 15 55 19 17 28 18 ]
C [ 22 13 34 20 26 4 18 2 7 7 45 15 31 29 36 45 ]
G [ 31 34 12 17 15 45 7 7 2 18 4 26 39 17 20 14 ]
T [ 29 28 29 26 55 15 10 6 85 64 36 4 11 37 16 23 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PB0171.1 PB0171 1 Sox18_2 Mus musculus
High Mobility Group box (HMG) Other Alpha-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: