Detailed information of matrix profile PB0170.1

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Profile summary
Name: Sox17_2
Matrix ID: PB0170.1
Class: Other Alpha-Helix
Family: High Mobility Group box (HMG)
Collection: PBM
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 19443739
Uniprot ID: Q61473  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 38 20 12 28 9 54 6 4 74 81 12 22 19 16 30 31 15 ]
C [ 21 17 26 18 36 15 12 6 6 4 3 13 17 15 21 14 40 ]
G [ 19 15 15 35 15 18 6 83 5 11 9 58 22 50 32 23 23 ]
T [ 22 47 48 19 40 13 76 8 15 4 76 7 42 19 17 32 22 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PB0170.1 PB0170 1 Sox17_2 Mus musculus
High Mobility Group box (HMG) Other Alpha-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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