Detailed information of matrix profile PB0068.1

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Profile summary
Name: Sox1_1
Matrix ID: PB0068.1
Class: Other Alpha-Helix
Family: High Mobility Group box (HMG)
Collection: PBM
Taxon: Vertebrates
Species: Mus musculus
Data Type: universal protein binding microarray (PBM)
Validation: 19443739
Uniprot ID: P53783  
Source:
Comment: Data is from Uniprobe database

Sequence logo

Frequency matrix

         
A [ 38 31 21 24 72 29 5 3 82 89 6 20 29 38 29 34 ]
C [ 32 28 17 15 5 5 2 24 3 2 2 3 11 23 18 9 ]
G [ 16 11 27 12 7 7 3 67 2 3 3 10 46 18 16 23 ]
T [ 14 30 36 50 16 59 90 6 13 6 90 67 14 21 38 34 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
PB0068.1 PB0068 1 Sox1_1 Mus musculus
High Mobility Group box (HMG) Other Alpha-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: