Detailed information of matrix profile MA1398.1

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Profile summary
Name: At5g47390
Matrix ID: MA1398.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9LVS0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 225 190 277 290 76 136 11 11 599 0 0 0 441 214 305 ]
C [ 119 122 73 45 285 300 44 6 0 0 599 527 4 126 16 ]
G [ 52 67 63 92 48 57 0 15 0 0 0 0 74 28 9 ]
T [ 203 220 186 172 190 106 544 567 0 599 0 72 80 231 269 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1398.1 MA1398 1 At5g47390 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0278.1

ChIP-seq Centrality
log(P-value): -28860.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0278.1

ChIP-seq Centrality
log(P-value): -28379.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: