Detailed information of matrix profile MA1368.1

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Profile summary
Name: AT3G25990
Matrix ID: MA1368.1
Class: Helix-Turn-Helix
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9LU92  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 75 78 0 0 62 0 17 4 0 0 77 63 38 33 9 22 15 46 49 17 24 ]
C [ 0 0 78 61 0 15 0 0 1 2 1 2 9 3 23 4 2 10 6 41 38 ]
G [ 3 0 0 0 16 2 61 74 0 0 0 13 16 6 5 8 10 7 7 7 4 ]
T [ 0 0 0 17 0 61 0 0 77 76 0 0 15 36 41 44 51 15 16 13 12 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1368.1 MA1368 1 AT3G25990 Arabidopsis thaliana
Trihelix Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: