Detailed information of matrix profile MA1366.1

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Profile summary
Name: AT1G76880
Matrix ID: MA1366.1
Class: Helix-Turn-Helix
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 2255908
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 292 101 149 0 0 416 480 449 380 316 191 149 164 207 248 226 ]
C [ 39 225 30 0 0 0 0 3 3 31 71 41 46 47 41 51 ]
G [ 111 39 292 480 0 14 0 8 0 32 73 141 94 100 53 55 ]
T [ 38 115 9 0 480 50 0 20 97 101 145 149 176 126 138 148 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1366.1 MA1366 1 AT1G76880 Arabidopsis thaliana
Trihelix Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0246.1

ChIP-seq Centrality
log(P-value): -399.329

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0246.1

ChIP-seq Centrality
log(P-value): -389.087

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: