Detailed information of matrix profile MA1365.1

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Profile summary
Name: AT5G47660
Matrix ID: MA1365.1
Class: Helix-Turn-Helix
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 74 76 64 65 68 20 44 6 0 71 244 0 12 23 12 ]
C [ 18 30 73 63 21 8 1 15 0 8 0 244 142 24 83 ]
G [ 13 33 14 25 46 25 0 10 0 0 0 0 10 169 6 ]
T [ 139 105 93 91 109 191 199 213 244 165 0 0 80 28 143 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1365.1 MA1365 1 AT5G47660 Arabidopsis thaliana
Trihelix Helix-Turn-Helix
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

Included Models:

GC Content: