Detailed information of matrix profile MA1356.1

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Profile summary
Name: TRP2
Matrix ID: MA1356.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 22197883
Uniprot ID: Q9SNB9  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 335 317 44 23 47 72 423 419 422 7 6 0 4 407 422 409 27 18 54 37 337 ]
C [ 34 24 303 344 272 0 0 1 2 416 414 416 3 2 1 4 350 383 303 43 28 ]
G [ 21 18 22 28 15 4 1 2 0 0 2 0 0 13 2 2 1 0 7 7 15 ]
T [ 35 66 56 30 91 349 1 3 1 2 3 9 418 3 0 10 47 24 61 338 45 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1356.1 MA1356 1 TRP2 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0410.1

ChIP-seq Centrality
log(P-value): -238.539

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0410.1

ChIP-seq Centrality
log(P-value): -210.532

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: