Detailed information of matrix profile MA1355.1

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Profile summary
Name: TBP3
Matrix ID: MA1355.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 22197883
Uniprot ID: Q9JFW5  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 275 247 183 120 320 399 353 45 0 0 0 598 505 197 92 ]
C [ 91 122 146 85 8 3 0 553 598 598 0 0 0 92 121 ]
G [ 69 50 50 93 90 1 245 0 0 0 0 0 91 11 28 ]
T [ 163 179 219 300 180 195 0 0 0 0 598 0 2 298 357 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1355.1 MA1355 1 TBP3 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0394.1

ChIP-seq Centrality
log(P-value): -12769.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0394.1

ChIP-seq Centrality
log(P-value): -12701.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: