Detailed information of matrix profile MA1352.1

  1. Home
  2. Matrix > MA1352.1

Profile summary
Name: TRP1
Matrix ID: MA1352.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 22197883
Uniprot ID: Q8L7L8  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 253 19 17 30 29 302 304 307 4 13 1 3 296 295 306 3 6 24 13 290 263 ]
C [ 4 250 263 218 0 0 0 0 302 290 296 2 2 9 0 288 292 272 8 4 8 ]
G [ 8 11 14 11 3 2 1 0 0 0 6 2 2 2 0 1 4 0 1 6 28 ]
T [ 42 27 13 48 275 3 2 0 1 4 4 300 7 1 1 15 5 11 285 7 8 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1352.1 MA1352 1 TRP1 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0409.1

ChIP-seq Centrality
log(P-value): -200.991

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0409.1

ChIP-seq Centrality
log(P-value): -199.022

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: