Detailed information of matrix profile MA1287.1

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Profile summary
Name: At5g08330
Matrix ID: MA1287.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 21241251
Uniprot ID: Q9FTA2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 188 35 0 0 0 54 154 0 15 62 424 58 153 161 ]
C [ 77 5 20 0 0 1 289 597 582 415 37 338 150 104 ]
G [ 99 558 0 598 598 520 33 0 0 14 88 65 118 96 ]
T [ 234 0 578 0 0 23 122 1 1 107 49 137 177 237 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1287.1 MA1287 1 At5g08330 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0273.1

ChIP-seq Centrality
log(P-value): -9349.45

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0273.1

ChIP-seq Centrality
log(P-value): -9397.47

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: