Detailed information of matrix profile MA1282.1

  1. Home
  2. Matrix > MA1282.1

Profile summary
Name: PTF1
Matrix ID: MA1282.1
Class: Basic helix-loop-helix factors (bHLH)
Family: TCP domain
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 12000681
Uniprot ID: Q9S7W5  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 17 6 11 0 0 0 99 0 0 120 0 57 50 ]
C [ 9 11 9 0 0 0 21 129 130 0 117 16 10 ]
G [ 96 7 97 129 130 130 0 0 0 10 6 12 27 ]
T [ 8 106 13 1 0 0 10 1 0 0 7 45 43 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1282.1 MA1282 1 PTF1 Arabidopsis thaliana
TCP domain Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: