Detailed information of matrix profile MA1280.1

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Profile summary
Name: OBP4
Matrix ID: MA1280.1
Class: C2H2 zinc finger factors
Family: Dof-type
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10758479
Uniprot ID: Q8LDR0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 142 529 456 599 600 600 0 22 193 387 303 293 262 273 ]
C [ 194 17 0 0 0 0 0 37 23 32 102 77 96 87 ]
G [ 174 34 3 0 0 0 600 209 127 131 80 52 76 55 ]
T [ 90 20 141 1 0 0 0 332 257 50 115 178 166 185 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1280.1 MA1280 1 OBP4 Arabidopsis thaliana
Dof-type C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0376.1

ChIP-seq Centrality
log(P-value): -15462.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0376.1

ChIP-seq Centrality
log(P-value): -14742.3

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: