Detailed information of matrix profile MA1224.1

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Profile summary
Name: CBF1
Matrix ID: MA1224.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 9952441
Uniprot ID: P93835  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 148 79 71 261 0 0 0 596 0 385 128 176 ]
C [ 64 192 288 0 596 600 0 0 600 38 100 204 ]
G [ 177 68 86 337 0 0 600 0 0 115 28 113 ]
T [ 211 261 155 2 4 0 0 4 0 62 344 107 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1224.1 MA1224 1 CBF1 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0313.1

ChIP-seq Centrality
log(P-value): -13054.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0313.1

ChIP-seq Centrality
log(P-value): -12829.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: