Detailed information of matrix profile MA1222.1

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Profile summary
Name: AT1G44830
Matrix ID: MA1222.1
Class: AP2/ERF domain
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 15319480
Uniprot ID: Q9LPE8  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 61 80 235 76 78 143 23 1 511 0 0 27 164 0 351 ]
C [ 342 395 57 361 405 25 446 592 0 595 595 0 307 591 2 ]
G [ 52 40 139 49 33 206 39 0 73 0 0 568 9 0 137 ]
T [ 140 80 164 109 79 221 87 2 11 0 0 0 115 4 105 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1222.1 MA1222 1 AT1G44830 Arabidopsis thaliana
AP2/ERF domain
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0235.1

ChIP-seq Centrality
log(P-value): -1339.14

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0235.1

ChIP-seq Centrality
log(P-value): -1598.43

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: