Detailed information of matrix profile MA1208.1

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Profile summary
Name: GT2
Matrix ID: MA1208.1
Class: Helix-Turn-Helix
Family: Trihelix
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10437822
Uniprot ID: Q39117  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 171 111 181 35 0 128 598 0 40 136 33 182 173 112 ]
C [ 56 56 0 13 0 35 0 593 378 36 186 107 52 97 ]
G [ 62 29 0 21 0 0 0 0 4 295 25 95 165 105 ]
T [ 309 402 417 529 598 435 0 5 176 131 354 214 208 284 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1208.1 MA1208 1 GT2 Arabidopsis thaliana
Trihelix Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0347.1

ChIP-seq Centrality
log(P-value): -7466.26

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0347.1

ChIP-seq Centrality
log(P-value): -7296.74

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: