Detailed information of matrix profile MA1196.1

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Profile summary
Name: At5g05790
Matrix ID: MA1196.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 319 295 16 139 0 7 587 0 0 133 119 131 351 92 150 ]
C [ 79 2 340 348 22 112 0 0 587 164 70 200 0 119 256 ]
G [ 59 33 40 67 0 15 0 0 0 15 57 116 26 37 41 ]
T [ 130 257 191 33 565 453 0 587 0 275 341 140 210 339 140 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1196.1 MA1196 1 At5g05790 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0272.1

ChIP-seq Centrality
log(P-value): -3201.35

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0272.1

ChIP-seq Centrality
log(P-value): -2933.91

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: