Detailed information of matrix profile MA1195.1

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Profile summary
Name: AT5G56840
Matrix ID: MA1195.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID:
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 335 377 47 114 11 13 594 0 0 6 432 224 333 254 197 ]
C [ 45 20 324 358 24 19 3 2 600 481 6 86 4 68 147 ]
G [ 57 72 37 59 2 7 0 1 0 0 47 30 10 25 88 ]
T [ 163 131 192 69 563 561 3 597 0 113 115 260 253 253 168 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1195.1 MA1195 1 AT5G56840 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0280.1

ChIP-seq Centrality
log(P-value): -17968.7

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0280.1

ChIP-seq Centrality
log(P-value): -17780.7

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: