Detailed information of matrix profile MA1185.1

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Profile summary
Name: LHY1
Matrix ID: MA1185.1
Class: Helix-Turn-Helix
Family: Myb-related
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: F4HQG9  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 512 0 599 0 597 0 3 51 172 113 ]
C [ 1 0 0 0 2 8 0 6 46 144 ]
G [ 31 599 0 0 0 5 3 0 34 117 ]
T [ 55 0 0 599 0 586 593 542 347 225 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1185.1 MA1185 1 LHY1 Arabidopsis thaliana
Myb-related Helix-Turn-Helix
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0356.1

ChIP-seq Centrality
log(P-value): -33625.7

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0356.1

ChIP-seq Centrality
log(P-value): -34819.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: