Detailed information of matrix profile MA1157.1

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Profile summary
Name: NUC
Matrix ID: MA1157.1
Class: C2H2
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 24039602
Uniprot ID: Q9FFH3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 139 141 151 170 127 70 8 0 0 0 0 0 18 3 63 74 148 56 24 131 ]
C [ 103 104 109 77 76 47 33 5 8 0 0 570 51 19 89 0 41 183 148 54 ]
G [ 87 90 83 84 85 42 19 8 0 570 5 0 381 33 46 3 15 202 55 227 ]
T [ 241 235 227 239 282 411 510 557 562 0 565 0 120 515 372 493 366 129 343 158 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1157.1 MA1157 1 NUC Arabidopsis thaliana
C2H2
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: