Detailed information of matrix profile MA0537.1

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Profile summary
Name: blmp-1
Matrix ID: MA0537.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc finger factors
Collection: CORE
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: ChIP-seq
Validation: 20421211
Uniprot ID: Q93560  
Source:
Comment: C. elegans blmp-1 is the homologue of mammalian Blimp1 (B Lymphocyte-Induced Maturation Protein-1, official name: PRDM1).

Sequence logo

Frequency matrix

         
A [ 112 33 153 0 0 1328 466 0 0 10 0 ]
C [ 1383 254 1086 0 3368 548 2060 152 442 266 1459 ]
G [ 128 0 0 0 0 335 0 0 0 0 0 ]
T [ 1745 3081 2129 3368 0 1157 842 3216 2926 3092 1909 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0537.1 MA0537 1 blmp-1 Caenorhabditis elegans
More than 3 adjacent zinc finger factors C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: