Detailed information of matrix profile MA0510.2

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Profile summary
Name: RFX5
Matrix ID: MA0510.2
Class: Fork head / winged helix factors
Family: RFX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 8754849
Uniprot ID: P48382  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 277 90 4 47 821 3 1 2146 144 760 143 139 2166 2206 26 462 ]
C [ 1075 0 33 98 81 2378 2118 42 56 11 48 1613 10 21 2379 890 ]
G [ 790 2819 15 10 1675 38 7 47 22 2266 2664 61 99 16 12 905 ]
T [ 490 9 2902 2842 142 69 725 188 2872 8 0 882 46 9 67 286 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0510.1 MA0510 1 RFX5 Homo sapiens
RFX-related factors Fork head / winged helix factors
MA0510.2 MA0510 2 RFX5 Homo sapiens
RFX-related factors Fork head / winged helix factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0090.1

ChIP-seq Centrality
log(P-value): -720.993

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0090.1

ChIP-seq Centrality
log(P-value): -722.168

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: