Detailed information of matrix profile MA0485.1

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Profile summary
Name: Hoxc9
Matrix ID: MA0485.1
Class: Homeo domain factors
Family: HOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 9079637
Uniprot ID: P09633  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 235 112 88 224 661 0 745 881 879 18 48 567 141 ]
C [ 110 171 605 468 3 9 84 0 6 0 715 72 329 ]
G [ 401 536 40 1 205 0 35 0 0 0 5 6 160 ]
T [ 139 66 152 192 16 876 21 4 0 867 117 240 255 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0485.1 MA0485 1 Hoxc9 Mus musculus
HOX-related factors Homeo domain factors
     

log(P-value) = -685

TFFM details

TFFM ID: TFFM0047.1

ChIP-seq Centrality
log(P-value): -5357.75

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0047.1

ChIP-seq Centrality
log(P-value): -5255.11

TFFM detailed summary logos

Description: homeobox C9

Alias: -

Symbol: HOXC9

Consensus:

Included Models:

GC Content: