Detailed information of matrix profile MA0142.1

  1. Home
  2. Matrix > MA0142.1

Profile summary
Name: Pou5f1::Sox2
Matrix ID: MA0142.1
Class: Homeo domain factors::High-mobility group (HMG) domain factors
Family: POU domain factors::SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 18555785
Uniprot ID: P20263   P48432  
Source:
Comment: -

Sequence logo

Frequency matrix

         
A [ 63 579 11 47 118 415 206 1235 17 10 14 1050 887 1200 198 ]
C [ 846 58 50 12 363 18 365 30 5 16 1029 16 68 33 119 ]
G [ 66 28 36 79 825 29 186 24 15 1239 129 30 315 75 207 ]
T [ 389 701 1270 1231 63 907 612 80 1332 104 196 269 92 53 837 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0142.1 MA0142 1 Pou5f1::Sox2 Mus musculus
POU domain factors::SOX-related factors Homeo domain factors::High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description: POU class 5 homeobox 1

Alias: OCT3,Oct4,MGC22487

Symbol: POU5F1

Consensus:

Included Models:

GC Content: